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10.
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de novo, parallel, sequence assembler for short reads
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Summary
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(no translation yet)
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Located in
Package: abyss
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11.
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ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.
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Description
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(no translation yet)
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Located in
Package: abyss
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12.
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To cite your use of ABySS, please reference ABySS: A parallel assembler for short read sequence data. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. Genome Research, 2009-June.
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Description
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(no translation yet)
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Located in
Package: abyss
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13.
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archive file manipulation program
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Summary
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(no translation yet)
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Located in
Package: afio
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14.
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Afio manipulates groups of files, copying them within or between filesystems and an afio archive.
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Description
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(no translation yet)
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Located in
Package: afio
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15.
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Afio archives are portable as they contain only ASCII-formatted header information. Afio makes cpio-format archives. Afio deals somewhat gracefully with input data corruption. Afio supports multi-volume archives during interactive operation. Afio can make compressed archives that are much safer than compressed tar or cpio archives.
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Description
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(no translation yet)
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Located in
Package: afio
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16.
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Afio is best used as an `archive engine' in a backup script.
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Description
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(no translation yet)
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Located in
Package: afio
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17.
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text search tool with support for approximate patterns
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Summary
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(no translation yet)
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Located in
Package: agrep
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18.
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agrep is a version of standard grep with the following enhancements:
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Description
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(no translation yet)
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Located in
Package: agrep
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19.
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* the ability to search for approximate patterns 
* it is record oriented rather than just line oriented
* multiple patterns with AND OR logic queries
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Description
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represents a line break.
Start a new line in the equivalent position in the translation.
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represents a space character.
Enter a space in the equivalent position in the translation.
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(no translation yet)
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Located in
Package: agrep
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