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963.
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ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language) 
NucML: Maximum Likelihood Inference of Nucleic Acid Phylogeny
ProtST: Basic Statistics of Protein Sequences
NucST: Basic Statistics of Nucleic Acid Sequences
NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl)
mollist: get identifiers list molrev: reverse DNA sequences
molcat: concatenate sequences molcut: get partial sequences
molmerge: merge sequences nuc2ptn: DNA -> Amino acid
rminsdel: remove INS/DEL sites molcodon: get specified codon sites
molinfo: get varied sites mol2mol: MOLPHY format beautifer
inl2mol: Interleaved -> MOLPHY mol2inl: MOLPHY -> Interleaved
mol2phy: MOLPHY -> Sequential phy2mol: Sequential -> MOLPHY
must2mol: MUST -> MOLPHY etc. |
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Description
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represents a line break.
Start a new line in the equivalent position in the translation.
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represents a space character.
Enter a space in the equivalent position in the translation.
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(no translation yet)
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Located in
Package: molphy
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1030.
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MythNetvision is a plugin designed to make adding Internet video sources to MythTV fun and easy. MythNetvision consists of two components: - a search screen - a site/RSS browser screen. When installed, MythNetvision appears on the Media Library screen as the options "Search Internet Video" and "Browse Internet Video."
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Description
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(no translation yet)
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Located in
Package: mythnetvision
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1071.
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nauty (no automorphisms, yes?) is a set of procedures for determining the automor- phism group of a vertex-coloured graph. It provides this information in the form of a set of generators, the size of the group, and the orbits of the group. It is also able to produce a canonically-labelled isomorph of the graph, to assist in isomorphism testing. This package provides the main command line tool dreadnaut, and some utilities ('gtools'). A C API is also available.
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Description
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(no translation yet)
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Located in
Package: nauty
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1166.
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ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed.
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Description
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(no translation yet)
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Located in
Package: parmetis-test
Package: parmetis-doc
Package: libparmetis4.0
Package: libparmetis-dev
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1173.
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PCx is a freely available primal-dual interior-point code for linear programming. It implements Mehrotra's predictor-corrector algorithm, the algorithm that forms the basis of most existing interior-point codes for general linear programming. The major computational operation--solution of a linear system with a large, sparse positive definite coefficient matrix--is performed with the sparse Cholesky package of Ng and Peyton (Oak Ridge National Laboratory), with minor modifications to handle small pivot elements. PCx does not solve integer programming problems.
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Description
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(no translation yet)
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Located in
Package: pcx
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1180.
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The PHYLogeny Inference Package is a package of programs for inferring phylogenies (evolutionary trees) from sequences. Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites, distance matrices, and 0/1 discrete characters.
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Description
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(no translation yet)
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Located in
Package: phylip-doc
Package: phylip
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1208.
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Persistance of vision raytracer (3D renderer) include files
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Summary
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(no translation yet)
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Located in
Package: povray-includes
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1251.
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PyGPU is a compiler that lets you write image processing programs in Python that execute on the graphics processing unit (GPU) present in modern graphics cards. This enables image processing algorithms to take advantage of the performance of the GPU. In some applications, performance increases approach an order of magnitude, compared to CPUs.
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Description
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(no translation yet)
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Located in
Package: python-pygpu
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1253.
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PyOpenCL lets you access the OpenCL parallel computation API from Python. Here's what sets PyOpenCL apart:
* Object cleanup tied to lifetime of objects. This idiom, often called
RAII in C++, makes it much easier to write correct, leak- and
crash-free code.
* Completeness. PyOpenCL puts the full power of OpenCLâs API at your
disposal, if you wish.
* Convenience. While PyOpenCL's primary focus is to make all of OpenCL
accessible, it tries hard to make your life less complicated as it
does so--without taking any shortcuts.
* Automatic Error Checking. All OpenCL errors are automatically
translated into Python exceptions.
* Speed. PyOpenCLâs base layer is written in C++, so all the niceties
above are virtually free.
* Helpful, complete documentation and a wiki.
* Liberal licensing (MIT). |
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Description
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represents a line break.
Start a new line in the equivalent position in the translation.
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represents a space character.
Enter a space in the equivalent position in the translation.
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(no translation yet)
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Located in
Package: python-pyopencl
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1259.
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A profiler is a program that describes the run time performance of a program, providing a variety of statistics. This profiler provides deterministic profiling of any Python programs. It also provides a series of report generation tools to allow users to rapidly examine the results of a profile operation.
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Description
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(no translation yet)
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Located in
Package: python3-profiler
Package: python-profiler
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